PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G163843_P01
Common NameZEAMMB73_584430, Zm.18934
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 356aa    MW: 38206.1 Da    PI: 5.6107
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G163843_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM769e-24141473128
                NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknr..atksgyWkatg 87 
                        p f+ hP+d elv++yL++ ve+   +   +i+++d+y ++P+ L +      ++ +e+ wyf+++ ++k+ +g+rk+r  at  g W++  
  GRMZM2G163843_P01  14 PAFQSHPSDLELVNFYLRPWVETGVKTG-AFIHDADVYAADPNYLTRqfapaVAQDGERAWYFYTPLRHKSVHGTRKTRtvATGGGCWHNEA 104
                        67889*****************998666.78**************84467755566888********************7668899****** PP

                NAM  88 kdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        k ++v+    + +++  ++++ f +++    ++t W+m e rl
  GRMZM2G163843_P01 105 KARPVYMVsnGMHQIAHRQSFSFVEKDGGVRVRTGWLMMELRL 147
                        *****987667889**********9999999*********886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-2912174IPR003441NAC domain
PROSITE profilePS5100531.42512174IPR003441NAC domain
PfamPF023651.8E-1314147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006340anatomyadult vascular leaf
PO:0009025anatomyvascular leaf
PO:0020040anatomyleaf base
PO:0001052developmental stagevascular leaf expansion stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MARPPSAALK PPYPAFQSHP SDLELVNFYL RPWVETGVKT GAFIHDADVY AADPNYLTRQ  60
FAPAVAQDGE RAWYFYTPLR HKSVHGTRKT RTVATGGGCW HNEAKARPVY MVSNGMHQIA  120
HRQSFSFVEK DGGVRVRTGW LMMELRLVED GAAGQKPEED GALGSRVLCK VYRSPRNPEP  180
SGIEAATAPG QKAEADDDES CDDESSDATL DDDDSSNASL AAASGPKRES DEVESSDATV  240
AAPSRHSAPN DEISGGSAVA PGRKEKTEIG EVSTETSAAV RKRRKADGSS SPSTPVSTTD  300
MHCPQCGTHL MLTLNMAESK SEAGLAKDES ATAAPDQGGT GESSQKNVRV RFHQFL
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G163843
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G163843_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0875890.0BT087589.1 Zea mays full-length cDNA clone ZM_BFb0124L16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147684.10.0no apical meristem protein
TrEMBLC4J9U20.0C4J9U2_MAIZE; Putative NAC domain transcription factor superfamily protein
TrEMBLK0DCP80.0K0DCP8_MAIZE; NAC134 NAC type transcription factor (Fragment)
STRINGGRMZM2G163843_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40112972
Representative plantOGRP1201646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.14e-18NAC domain containing protein 94